PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 492266
Common NameARALYDRAFT_492266
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 589aa    MW: 66347.8 Da    PI: 9.3847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
492266genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296283223
             EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
             kC++C++ F ++ n++rH r+H
   492266 62 KCEKCSREFCSPVNFRRHNRMH 83
             7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9286188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MELVKQDGND SVDMLIRRAV GKDPFLSFHR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDSGKERDAL GAFWNKLSAT DAKEILSLKS  120
MMLEDVPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD ILQARPPRFP ISSQELFSIL  180
DDASEKTFLS SEAAPMQKYI FDGEIGKTVL EAKNVVACVS FLLEQPLIKA WLADKDVEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQREKDQK KDDKEEESTT SEEQQYPAES  300
SSPLSVASDA EAQRPDSIPI DDSSSLEDPQ VLETNNGRNV ETQAPMVDDN GLGHGQNMER  360
RSGRRQMQRS QQGMLNGFHV NHAPKLGGMR KNGTNRDARV NTTKVWSRKS DNPKLISQHA  420
AVTQQDQTEI SEFRIGSVSV TIRNSGEHNQ TKCSEGEGRT KTVEAKPTSE QSTVKIWRPV  480
SSQGRKISTV DENTDKEDKK SNSTLPKAKT AHHISLQFNN HEAKAFLAKR WKEATTAEHV  540
TLVLSQETNI SGNNTHESSN GVITARPELR TKPEKGTKVK YVPKQRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268ERKKRKKL
2263267KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869664.10.0zinc finger family protein
TrEMBLD7MFZ10.0D7MFZ1_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.7__1699__AT4G25610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein